Not really sure why the voltage is low at B+3, but that would account for it being low at pins 1 and 6 of the 12AX7.
Try tracing the B+ as it goes through the various feeds. Check it at the Mosfet and the first filter capacitor. You said this is 406 volts which is good.
Then see if you get the same reading where it joins the 1k resistor on the terminal strip.
Then check the other end of the resistor where it joins the 1k that feeds the 6V6. This is B+2. It should be a bit less than B+.
Then see if you get the same reading at the left end (when viewed from the front of the amp) of the 47k resistor that feeds the 12AX7. The right end of this resistor is B+3 which you said is low. It looks like you have a 47k resistor in this location, but it's worth checking it with an ohmmeter just to make sure. You should disconnect one end to get a true reading.
Also, make sure the jumper on the bottom of the board going from the 47k resistor to the two 220k resistors has solid connections and isn't shorted to anything.
As for the other problem, the Mosfet could be shorted drain to source. Here's a link to a YouTube video that shows a simple way to test Mosfets with just a DMM. You have to disconnect the Mosfet to test it.
https://youtu.be/RBJGOOTEwfU